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count matrix
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4
votes
10
replies
5.3k
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Finding gene lengths of mm10 to calculate rpkm from count matrix of rna-seq dataset
rpkm
gene length
count matrix
edgeR
rsubread
8.6 years ago
AB
▴ 110
4
votes
11
replies
2.3k
views
Enquiry about the summarizeOverlaps() function
summarizeoverlaps
summarizedexperiment
count matrix
low counts
rna-seq
updated 8.3 years ago by
Valerie Obenchain
★ 6.8k • written 8.3 years ago by
shania90.lk
▴ 10
0
votes
1
reply
1.8k
views
RSEM output in DeSeq2
RSEM
deseq2
count matrix
updated 7.2 years ago by
Michael Love
42k • written 7.2 years ago by
kmeusemann
• 0
3
votes
1
reply
4.7k
views
Creating a count matrix from 8 bam files in R (RNAseq experiment)
deseq2
rnaseq
count matrix
galignments
granges
updated 6.9 years ago by
Michael Love
42k • written 6.9 years ago by
bananaal1
▴ 10
2
votes
2
replies
7.4k
views
RNA STAR to DESeq2
deseq2
count matrix
star
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
nikelle.petrillo
• 0
0
votes
2
replies
1.4k
views
How to simulate a count matrix using Polyester
simulation
count matrix
RNA-seq
Polyester
updated 6.4 years ago by
Alyssa Frazee
▴ 210 • written 6.4 years ago by
fa.gholizadeh89
• 0
1
vote
1
reply
1.9k
views
How can I retrieve the gene names of my count matrix?
rnaseq
summarizeoverlaps
count matrix
updated 6.3 years ago by
James W. MacDonald
65k • written 6.3 years ago by
johnsonn573
• 0
1
vote
1
reply
830
views
count matrix from BAM file
count matrix
6.8 years ago
nosheenfaiz09
• 0
8 results • Page
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Comment: More regions in union when increasing DBA$config$mergeOverlap
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Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Votes
Answer: minfi latest update for EPIC V2 chip
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
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